* denotes undergraduate authors. Full Text PDFs linked to DOIs.
Wyatt, K.H., Seballos, R., Shoemaker, M.N., Brown, S.P., Chandra, S., Kuehn, K.A., Rober, A.R., and S. Sadro (2019) Resource constraints highlight complex microbial interactions during lake biofilm development. Journal of Ecology (in press) ~ DOI:10.1111/1365-2745.13223
Brown, S.P. and A. Jumpponen (2019) Microbiology of snow reveals taxa-specific biogeographical structure. Microbial Ecology 77: 946-958 ~ DOI:10.1007/s00248-019-01357-z
Jones, J.M., Heath, K.D., Ferrer, A., Brown, S.P., Canam, T., and J.W. Dalling (2019) Wood decomposition in aquatic and terrestrial ecosystems in the tropics: contrasting biotic and abiotic processes. FEMS Microbiology Ecology 95: fiy223 ~ DOI:10.1093/femsec/fiy223
Brown, S.P., Leopold, D.R., and P.E. Busby (2018) Protocols for investigating the leaf mycobiome using high-throughput DNA sequencing. In: Ma, W. and Wolpert, T. (eds.), Plant Pathogenic Fungi and Oomycetes: Methods and Protocols vol 1848. Humana Press, New York, NY, USA pp 39-51. ~ DOI:10.1007/978-1-4939-8724-5_4
Veach, A.M., Stegen, J., Brown, S.P., Dodds, W.K., and A. Jumpponen (2016) Spatial and successional dynamics of microbial biofilm communities in a grassland stream ecosystem. Molecular Ecology 25: 4674-4688. ~ DOI:10.1111/mec.13784
Brown, S.P., Ungerer, M.C. and A. Jumpponen. (2016) A community of clones: snow algae are diverse communities of spatially structured clones. International Journal of Plant Sciences 177: 432-439. ~ DOI:10.1086/686019
Brown, S.P., A. Ferrer, J. Dalling, and K.D. Heath. (2016) Don’t put all your eggs in one basket: a cost-effective and powerful method to optimize primer choice for rRNA environmental community analyses using the Fluidigm Access Array. Molecular Ecology Resources 16: 946- 956. ~ DOI: 10.1111/1755-0998.12507
Brown, S.P. and A. Jumpponen. (2015) Phylogenetic diversity analyses reveal disparity between fungal and bacterial communities during microbial primary succession. Soil Biology & Biochemistry 89: 52-60. ~ DOI:10.1016/j.soilbio.2015.06.025
Jumpponen, A., Brown, S.P., Trappe, J.M., Cázares, E., and R. Strömmer. (2015) Analyses of sporocarps, morphotyped ectomycorrhizae, environmental ITS and LSU sequences identify common genera that occur at a periglacial site. Journal of Fungi 1: 76-93. ~ DOI:10.3390/jof1010076
Brown, S.P., Olson, B.J.S.C., and A. Jumpponen (2015) Fungi and algae co-occur in snow: an issue of shared habitat of algal facilitation of heterotrophs? Alpine, Antarctic, and Alpine Research 47: 729-749. ~ DOI:10.1675/AAAR0014-071
Oliver, A.K., Brown, S.P., Callaham Jr., M.A., and A. Jumpponen (2015) Polymerase matters: non-proofreading enzymes inflate richness estimates by up to 15%. Fungal Ecology 15: 86-89. ~ DOI:10.1016/j.funeco.2015.03.003
Saravesi, K., Aikio, S., Wäli, P., Ruotsalainen, A.L., Kaukonen, M., Huusko K., Suokas, M., Brown, S.P., Jumpponen, A., Tuomi J., and A., Markkola. (2015) Moth outbreaks alter root-associated fungal communities in subarctic mountain birch forests. Microbial Ecology 69: 788-797. ~ DOI:10.1007/s00248-015-0577-8
Brown, S.P., Veach, A.M., Rigdon-Huss, A.R., Grond, K., *Lickteig, S.K., *Lothamer, K., Oliver, A.K., and A. Jumpponen (2015) Scraping the bottom of the barrel: are rare high-throughput sequences artifacts? Fungal Ecology 13: 221-225. ~ DOI:10.1046/j.funeco.2014.08.006
Jumpponen, A. and S.P. Brown (2014) The rich and the sensitive: diverse fungal communities change functionally with the warming Arctic. Molecular Ecology 23: 3127-3129. ~ DOI:10.0000/mec.12805
Brown, S.P., Rigdon-Huss, A.R. and A. Jumpponen (2014) Analyses of ITS and LSU gene regions provide congruent results on fungal community responses. Fungal Ecology 9: 65-68. ~ DOI:10.1016/j.funeco.2014.02.002
Lothamer, K.L., Brown, S.P., Mattox, J.D. and A. Jumpponen (2014) Comparison of root-associated communities of native and non-native ectomycorrhizal hosts in an urban landscape. Mycorrhiza 24: 267-280. ~ DOI:10.1007/s00572-013-0539-2
Brown, S. P. and A. Jumpponen (2014) Contrasting primary successional trajectories of fungi and bacteria in retreating glacier soils. Molecular Ecology 23: 481-497. ~ DOI:10.1111/mec.12487
Brown, S. P., Callaham Jr, M.A., Oliver, A.K. and A. Jumpponen (2013) Deep Ion Torrent sequencing identifies soil fungal community shifts after frequent prescribed fires in a southeastern US forest ecosystem. FEMS Microbiology Ecology 86: 557-566. ~ DOI:10.1111/1574-6941.12181
Jumpponen, A., Brown, S.P., Trappe, J.M., Cázares, E., and R. Strömmer (2012) Twenty years of research on fungal-plant interactions on Lyman Glacier forefront – lessons learned and questions yet unanswered. Fungal Ecology 5(4): 430-442. ~ DOI:10.1016/j.funeco.2012.01.002
Wyatt, K.H., Seballos, R., Shoemaker, M.N., Brown, S.P., Chandra, S., Kuehn, K.A., Rober, A.R., and S. Sadro (2019) Resource constraints highlight complex microbial interactions during lake biofilm development. Journal of Ecology (in press) ~ DOI:10.1111/1365-2745.13223
Brown, S.P. and A. Jumpponen (2019) Microbiology of snow reveals taxa-specific biogeographical structure. Microbial Ecology 77: 946-958 ~ DOI:10.1007/s00248-019-01357-z
Jones, J.M., Heath, K.D., Ferrer, A., Brown, S.P., Canam, T., and J.W. Dalling (2019) Wood decomposition in aquatic and terrestrial ecosystems in the tropics: contrasting biotic and abiotic processes. FEMS Microbiology Ecology 95: fiy223 ~ DOI:10.1093/femsec/fiy223
Brown, S.P., Leopold, D.R., and P.E. Busby (2018) Protocols for investigating the leaf mycobiome using high-throughput DNA sequencing. In: Ma, W. and Wolpert, T. (eds.), Plant Pathogenic Fungi and Oomycetes: Methods and Protocols vol 1848. Humana Press, New York, NY, USA pp 39-51. ~ DOI:10.1007/978-1-4939-8724-5_4
Veach, A.M., Stegen, J., Brown, S.P., Dodds, W.K., and A. Jumpponen (2016) Spatial and successional dynamics of microbial biofilm communities in a grassland stream ecosystem. Molecular Ecology 25: 4674-4688. ~ DOI:10.1111/mec.13784
Brown, S.P., Ungerer, M.C. and A. Jumpponen. (2016) A community of clones: snow algae are diverse communities of spatially structured clones. International Journal of Plant Sciences 177: 432-439. ~ DOI:10.1086/686019
Brown, S.P., A. Ferrer, J. Dalling, and K.D. Heath. (2016) Don’t put all your eggs in one basket: a cost-effective and powerful method to optimize primer choice for rRNA environmental community analyses using the Fluidigm Access Array. Molecular Ecology Resources 16: 946- 956. ~ DOI: 10.1111/1755-0998.12507
Brown, S.P. and A. Jumpponen. (2015) Phylogenetic diversity analyses reveal disparity between fungal and bacterial communities during microbial primary succession. Soil Biology & Biochemistry 89: 52-60. ~ DOI:10.1016/j.soilbio.2015.06.025
Jumpponen, A., Brown, S.P., Trappe, J.M., Cázares, E., and R. Strömmer. (2015) Analyses of sporocarps, morphotyped ectomycorrhizae, environmental ITS and LSU sequences identify common genera that occur at a periglacial site. Journal of Fungi 1: 76-93. ~ DOI:10.3390/jof1010076
Brown, S.P., Olson, B.J.S.C., and A. Jumpponen (2015) Fungi and algae co-occur in snow: an issue of shared habitat of algal facilitation of heterotrophs? Alpine, Antarctic, and Alpine Research 47: 729-749. ~ DOI:10.1675/AAAR0014-071
Oliver, A.K., Brown, S.P., Callaham Jr., M.A., and A. Jumpponen (2015) Polymerase matters: non-proofreading enzymes inflate richness estimates by up to 15%. Fungal Ecology 15: 86-89. ~ DOI:10.1016/j.funeco.2015.03.003
Saravesi, K., Aikio, S., Wäli, P., Ruotsalainen, A.L., Kaukonen, M., Huusko K., Suokas, M., Brown, S.P., Jumpponen, A., Tuomi J., and A., Markkola. (2015) Moth outbreaks alter root-associated fungal communities in subarctic mountain birch forests. Microbial Ecology 69: 788-797. ~ DOI:10.1007/s00248-015-0577-8
Brown, S.P., Veach, A.M., Rigdon-Huss, A.R., Grond, K., *Lickteig, S.K., *Lothamer, K., Oliver, A.K., and A. Jumpponen (2015) Scraping the bottom of the barrel: are rare high-throughput sequences artifacts? Fungal Ecology 13: 221-225. ~ DOI:10.1046/j.funeco.2014.08.006
Jumpponen, A. and S.P. Brown (2014) The rich and the sensitive: diverse fungal communities change functionally with the warming Arctic. Molecular Ecology 23: 3127-3129. ~ DOI:10.0000/mec.12805
Brown, S.P., Rigdon-Huss, A.R. and A. Jumpponen (2014) Analyses of ITS and LSU gene regions provide congruent results on fungal community responses. Fungal Ecology 9: 65-68. ~ DOI:10.1016/j.funeco.2014.02.002
Lothamer, K.L., Brown, S.P., Mattox, J.D. and A. Jumpponen (2014) Comparison of root-associated communities of native and non-native ectomycorrhizal hosts in an urban landscape. Mycorrhiza 24: 267-280. ~ DOI:10.1007/s00572-013-0539-2
Brown, S. P. and A. Jumpponen (2014) Contrasting primary successional trajectories of fungi and bacteria in retreating glacier soils. Molecular Ecology 23: 481-497. ~ DOI:10.1111/mec.12487
Brown, S. P., Callaham Jr, M.A., Oliver, A.K. and A. Jumpponen (2013) Deep Ion Torrent sequencing identifies soil fungal community shifts after frequent prescribed fires in a southeastern US forest ecosystem. FEMS Microbiology Ecology 86: 557-566. ~ DOI:10.1111/1574-6941.12181
Jumpponen, A., Brown, S.P., Trappe, J.M., Cázares, E., and R. Strömmer (2012) Twenty years of research on fungal-plant interactions on Lyman Glacier forefront – lessons learned and questions yet unanswered. Fungal Ecology 5(4): 430-442. ~ DOI:10.1016/j.funeco.2012.01.002