* denotes undergraduate authors
Brown, S.P., Leopold, D.R., and P.E. Busby (2018) Protocols for investigating the leaf microbiome using high throughput DNA sequencing. In: Ma, W. and Wolpert, T. (eds.), Plant Pathogenic Fungi and Oomycetes: Methods and Protocols. Springer, New York. Pp xxx-xxx. (in press)
Veach, A.M., Stegen, J., Brown, S.P., Dodds, W.K., and A. Jumpponen (2016) Spatial and successional dynamics of microbial biofilm communities in a grassland stream ecosystem. Molecular Ecology 25: 4674-4688. ~ DOI:10.1111/mec.13784
Brown, S.P., Ungerer, M.C. and A. Jumpponen. (2016) A community of clones: snow algae are diverse communities of spatially structured clones. International Journal of Plant Sciences 177: 432-439. ~ DOI:10.1086/686019
Brown, S.P., A. Ferrer, J. Dalling, and K.D. Heath. (2016) Don’t put all your eggs in one basket: a cost-effective and powerful method to optimize primer choice for rRNA environmental community analyses using the Fluidigm Access Array. Molecular Ecology Resources 16: 946- 956. ~ DOI: 10.1111/1755-0998.12507
Brown, S.P. and A. Jumpponen. (2015) Phylogenetic diversity analyses reveal disparity between fungal and bacterial communities during microbial primary succession. Soil Biology & Biochemistry 89: 52-60. ~ DOI:10.1016/j.soilbio.2015.06.025
Jumpponen, A., Brown, S.P., Trappe, J.M., Cázares, E., and R. Strömmer. (2015) Analyses of sporocarps, morphotyped ectomycorrhizae, environmental ITS and LSU sequences identify common genera that occur at a periglacial site. Journal of Fungi 1: 76-93. ~ DOI:10.3390/jof1010076
Brown, S.P., Olson, B.J.S.C., and A. Jumpponen (2015) Fungi and algae co-occur in snow: an issue of shared habitat of algal facilitation of heterotrophs? Alpine, Antarctic, and Alpine Research 47: 729-749. ~ DOI:10.1675/AAAR0014-071
Oliver, A.K., Brown, S.P., Callaham Jr., M.A., and A. Jumpponen (2015) Polymerase matters: non-proofreading enzymes inflate richness estimates by up to 15%. Fungal Ecology 15: 86-89. ~ DOI:10.1016/j.funeco.2015.03.003
Saravesi, K., Aikio, S., Wäli, P., Ruotsalainen, A.L., Kaukonen, M., Huusko K., Suokas, M., Brown, S.P., Jumpponen, A., Tuomi J., and A., Markkola. (2015) Moth outbreaks alter root-associated fungal communities in subarctic mountain birch forests. Microbial Ecology 69: 788-797. ~ DOI:10.1007/s00248-015-0577-8
Brown, S.P., Veach, A.M., Rigdon-Huss, A.R., Grond, K., *Lickteig, S.K., *Lothamer, K., Oliver, A.K., and A. Jumpponen (2015) Scraping the bottom of the barrel: are rare high-throughput sequences artifacts? Fungal Ecology 13: 221-225. ~ DOI:10.1046/j.funeco.2014.08.006
Jumpponen, A. and S.P. Brown (2014) The rich and the sensitive: diverse fungal communities change functionally with the warming Arctic. Molecular Ecology 23: 3127-3129. ~ DOI:10.0000/mec.12805
Brown, S.P., Rigdon-Huss, A.R. and A. Jumpponen (2014) Analyses of ITS and LSU gene regions provide congruent results on fungal community responses. Fungal Ecology 9: 65-68. ~ DOI:10.1016/j.funeco.2014.02.002
Lothamer, K.L., Brown, S.P., Mattox, J.D. and A. Jumpponen (2014) Comparison of root-associated communities of native and non-native ectomycorrhizal hosts in an urban landscape. Mycorrhiza 24: 267-280. ~ DOI:10.1007/s00572-013-0539-2
Brown, S. P. and A. Jumpponen (2014) Contrasting primary successional trajectories of fungi and bacteria in retreating glacier soils. Molecular Ecology 23: 481-497. ~ DOI:10.1111/mec.12487
Brown, S. P., Callaham Jr, M.A., Oliver, A.K. and A. Jumpponen (2013) Deep Ion Torrent sequencing identifies soil fungal community shifts after frequent prescribed fires in a southeastern US forest ecosystem. FEMS Microbiology Ecology 86: 557-566. ~ DOI:10.1111/1574-6941.12181
Jumpponen, A., Brown, S.P., Trappe, J.M., Cázares, E., and R. Strömmer (2012) Twenty years of research on fungal-plant interactions on Lyman Glacier forefront – lessons learned and questions yet unanswered. Fungal Ecology 5(4): 430-442. ~ DOI:10.1016/j.funeco.2012.01.002
Brown, S.P., Leopold, D.R., and P.E. Busby (2018) Protocols for investigating the leaf microbiome using high throughput DNA sequencing. In: Ma, W. and Wolpert, T. (eds.), Plant Pathogenic Fungi and Oomycetes: Methods and Protocols. Springer, New York. Pp xxx-xxx. (in press)
Veach, A.M., Stegen, J., Brown, S.P., Dodds, W.K., and A. Jumpponen (2016) Spatial and successional dynamics of microbial biofilm communities in a grassland stream ecosystem. Molecular Ecology 25: 4674-4688. ~ DOI:10.1111/mec.13784
Brown, S.P., Ungerer, M.C. and A. Jumpponen. (2016) A community of clones: snow algae are diverse communities of spatially structured clones. International Journal of Plant Sciences 177: 432-439. ~ DOI:10.1086/686019
Brown, S.P., A. Ferrer, J. Dalling, and K.D. Heath. (2016) Don’t put all your eggs in one basket: a cost-effective and powerful method to optimize primer choice for rRNA environmental community analyses using the Fluidigm Access Array. Molecular Ecology Resources 16: 946- 956. ~ DOI: 10.1111/1755-0998.12507
Brown, S.P. and A. Jumpponen. (2015) Phylogenetic diversity analyses reveal disparity between fungal and bacterial communities during microbial primary succession. Soil Biology & Biochemistry 89: 52-60. ~ DOI:10.1016/j.soilbio.2015.06.025
Jumpponen, A., Brown, S.P., Trappe, J.M., Cázares, E., and R. Strömmer. (2015) Analyses of sporocarps, morphotyped ectomycorrhizae, environmental ITS and LSU sequences identify common genera that occur at a periglacial site. Journal of Fungi 1: 76-93. ~ DOI:10.3390/jof1010076
Brown, S.P., Olson, B.J.S.C., and A. Jumpponen (2015) Fungi and algae co-occur in snow: an issue of shared habitat of algal facilitation of heterotrophs? Alpine, Antarctic, and Alpine Research 47: 729-749. ~ DOI:10.1675/AAAR0014-071
Oliver, A.K., Brown, S.P., Callaham Jr., M.A., and A. Jumpponen (2015) Polymerase matters: non-proofreading enzymes inflate richness estimates by up to 15%. Fungal Ecology 15: 86-89. ~ DOI:10.1016/j.funeco.2015.03.003
Saravesi, K., Aikio, S., Wäli, P., Ruotsalainen, A.L., Kaukonen, M., Huusko K., Suokas, M., Brown, S.P., Jumpponen, A., Tuomi J., and A., Markkola. (2015) Moth outbreaks alter root-associated fungal communities in subarctic mountain birch forests. Microbial Ecology 69: 788-797. ~ DOI:10.1007/s00248-015-0577-8
Brown, S.P., Veach, A.M., Rigdon-Huss, A.R., Grond, K., *Lickteig, S.K., *Lothamer, K., Oliver, A.K., and A. Jumpponen (2015) Scraping the bottom of the barrel: are rare high-throughput sequences artifacts? Fungal Ecology 13: 221-225. ~ DOI:10.1046/j.funeco.2014.08.006
Jumpponen, A. and S.P. Brown (2014) The rich and the sensitive: diverse fungal communities change functionally with the warming Arctic. Molecular Ecology 23: 3127-3129. ~ DOI:10.0000/mec.12805
Brown, S.P., Rigdon-Huss, A.R. and A. Jumpponen (2014) Analyses of ITS and LSU gene regions provide congruent results on fungal community responses. Fungal Ecology 9: 65-68. ~ DOI:10.1016/j.funeco.2014.02.002
Lothamer, K.L., Brown, S.P., Mattox, J.D. and A. Jumpponen (2014) Comparison of root-associated communities of native and non-native ectomycorrhizal hosts in an urban landscape. Mycorrhiza 24: 267-280. ~ DOI:10.1007/s00572-013-0539-2
Brown, S. P. and A. Jumpponen (2014) Contrasting primary successional trajectories of fungi and bacteria in retreating glacier soils. Molecular Ecology 23: 481-497. ~ DOI:10.1111/mec.12487
Brown, S. P., Callaham Jr, M.A., Oliver, A.K. and A. Jumpponen (2013) Deep Ion Torrent sequencing identifies soil fungal community shifts after frequent prescribed fires in a southeastern US forest ecosystem. FEMS Microbiology Ecology 86: 557-566. ~ DOI:10.1111/1574-6941.12181
Jumpponen, A., Brown, S.P., Trappe, J.M., Cázares, E., and R. Strömmer (2012) Twenty years of research on fungal-plant interactions on Lyman Glacier forefront – lessons learned and questions yet unanswered. Fungal Ecology 5(4): 430-442. ~ DOI:10.1016/j.funeco.2012.01.002
